Semantic Laboratories
Solutions for Drug Discovery Research Intelligence

info@semanticlaboratories.com
La Jolla, CA

Scientific Ontology Resources

Public resources

  • bioassayxml.org - an open-source and voluntary organization to promote a standard vocabulary (using ontologies) and XML data format for sharing bioassay experimental results

  • Open Biology Ontologies - a link to the OBO open source project for shared biology vocabularies

  • Standards and Ontologies for Functional Genomics - a link to SOFG effort to develop shared vocabularies in biology

  • GO - a link to the gene ontology effort

  • IUPAC - a link to the standards group responsible for generating  chemical nomenclature

  • PharmGKB - a link to a pharmacogenetics knowledge base using ontologies for knowledge representation

  • Encyclopedia of Life - a link to the EOL effort to catalog the complete proteome of every living species

  • United Medical Language System - a link to the National Library of Medicine's knowledge source for medical terminology

  • MeSH - the National Library of Medicine's controlled vocabulary thesaurus

  • BioPAX - molecular pathways

  • NCI Thesaurus - a link to the National Cancer Institute's thesaurus covering cancer terminology

  • SOFGStandards and Ontologies for Functional Genomics

  • SNOMED_CTSNOMED Clinical Terms® (SNOMED CT®), is the universal health care terminology

  • LSID - OMG Life Sciences Identifiers Specification (LSID)

  • MGED Ontology - standardized terms for annotating microarray experiments

 

Additional info: